Supplementary info
Guide for the Supplementary Information:
- S.1 Detailed JUMP explanations
A detailed table of parts used for our DNA assemblies. - S.2. DNA sequences of all parts
A detailed table of parts used for our DNA assemblies. - S.3 All Plates Labelled
A list of all the DNA sequences we used in the project. - S.4 SDS page labelled
A confirmation of MT expression in 2 species and their WT and mutant constructs. - S.5 Colony PCRs labelled
A confirmation of inserted DNA and the assembly for all our constructs. - S.6 Mutation Sites
The proposed mutation sites for all Metallothionein species found using MSA done phylogenetically similar MTs. - S.7 Site Specific Mutagenesis
List of all mutagenic primers for GeneOrator along with explanation. - S.8 Targeted Mutagenesis primers
List of all mutagenic primers for Targeted mutagenesis along with explanation. - S.9 Generalised PS1 and PS2 primers
The sequence of the primers used for colony PCR and Error-prone PCR. - S.10 RT-DNA to ORF.py
A python script for the conversion Reverse transcription sequences into Open Reading Frames. - S.11 clean_automation.sh
A bash shell script for the automation of the docking simulations run on AutoDock 4.2. - S.12 Summarised Docking statistics
The pass/fail metric for each docked metallothionein’s cysteine residues and the free energy per ion data. - S.13 Docking Log Summaries of the best model
Detailed logs of the raw data generated per cysteine of each MT. - S.14 Reagent List
A list of the reagents used by us.
Members of this iDEC team also participated in the iGEM 2022 competition. A lot of elements of this project were adapted to the iGEM wiki, for more information on our iGEM project click here.