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Supplementary info

Guide for the Supplementary Information:

  • S.1 Detailed JUMP explanations
    A detailed table of parts used for our DNA assemblies.
  • S.2. DNA sequences of all parts
    A detailed table of parts used for our DNA assemblies.
  • S.3 All Plates Labelled
    A list of all the DNA sequences we used in the project.
  • S.4 SDS page labelled
    A confirmation of MT expression in 2 species and their WT and mutant constructs.
  • S.5 Colony PCRs labelled
    A confirmation of inserted DNA and the assembly for all our constructs.
  • S.6 Mutation Sites
    The proposed mutation sites for all Metallothionein species found using MSA done phylogenetically similar MTs.
  • S.7 Site Specific Mutagenesis
    List of all mutagenic primers for GeneOrator along with explanation.
  • S.8 Targeted Mutagenesis primers
    List of all mutagenic primers for Targeted mutagenesis along with explanation.
  • S.9 Generalised PS1 and PS2 primers
    The sequence of the primers used for colony PCR and Error-prone PCR.
  • S.10 RT-DNA to ORF.py
    A python script for the conversion Reverse transcription sequences into Open Reading Frames.
  • S.11 clean_automation.sh
    A bash shell script for the automation of the docking simulations run on AutoDock 4.2.
  • S.12 Summarised Docking statistics
    The pass/fail metric for each docked metallothionein’s cysteine residues and the free energy per ion data.
  • S.13 Docking Log Summaries of the best model
    Detailed logs of the raw data generated per cysteine of each MT.
  • S.14 Reagent List
    A list of the reagents used by us.

Members of this iDEC team also participated in the iGEM 2022 competition. A lot of elements of this project were adapted to the iGEM wiki, for more information on our iGEM project click here.